cda2vmr container

Steps required to build cda2vmr docker image:

1. Download opencds-cdstovmr-docker
2. Install Mercurial
3. Clone and build cda-web-service project
4. Copy cda-ws-web.war and cda-ws-ear.ear into docker folder
5. Download terminology files and place them into docker folder
6. Define the URL of the opencds instance on ejb-jar.xml
7. Build and deploy container

git clone https://bitbucket.org/opencds/opencds-cdstovmr-docker

In order to build this image you will need cda-ws-ear.ear and cda-ws-web.war files.  These files can be obtained by cloning and building the cda-web-service project.  First you need to install Mercurial (https://mercurial.selenic.com/) which is the control management tool used in this project.

sudo apt-get install mercurial

hg clone https://bitbucket.org/sharps-ds2/cda-web-service
cd cda-web-service; mvn clean install 

cp cda-web-service/cda-ws-ear/target/cda-ws-ear.ear opencds-cdstovmr-docker/
cp cda-web-service/cda-ws-webapp/target/cda-ws-web.war opencds-cdstovmr-docker/

Also you need the following terminology resources:

From http://www.nlm.nih.gov/research/umls/

• ICD9CM_SNOMED_MAP_1TO1.txt

• ICD9CM_SNOMED_MAP_1TOM.txt

• SNOMEDCT_CORE_SUBSET_201311.txt

• tls_Icd10HumanReadableMap_INT_20131220.tsv

From  http://www.hcup-us.ahrq.gov/toolssoftware/icd_10/ccs_icd10_2006.zip

• ccs_icd10_2006.csv data

Place these five files into opencds-cdstovmr-docker folder

        <session>
            <ejb-name>OpenCdsServiceMGR</ejb-name>
            <env-entry>
                <env-entry-name>OPENCDS_ENDPOINT</env-entry-name>
                <env-entry-type>java.lang.String</env-entry-type>
                <env-entry-value>http://192.168.1.101:8081/opencds-decision-support-service-1.2.0-SNAPSHOT/evaluate</env-entry-value>
            </env-entry> 

sudo docker build -t="opencds/cdatovmr" .
sudo docker run -p 8080:8080 -p 2222:22 -p 4848:4848 -p 8181:8181 -p 9009:9009 --name cdatovmr -i -t opencds/cdatovmr

By default the image includes the following four applications:

• Inference analyzer - http://locahost:8080/SimplePredicateReducerVisualizer-1.0-SNAPSHOT
• opencds service - http://localhost:8080/opencds-decision-support-service-1.2.0-SNAPSHOT/evaluate?wsdl
• Predicate reducer Web service - http://localhost:8080/CdaService/Evaluate?wsdl
• Predicate reducer web application -  http://localhost:8080/cda-ws-web/ 

It is important to note that you can remove any of these applications by editing the Dockerfile.