Under Construction
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Overview
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Please check the wiki page OpenCDS container for more details about how to build the opencds docker image. The following command will create a new container called opencds based on the image opencds/opencds:ubuntu
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$ sudo docker run -d --name opencds opencds/opencds:ubuntu |
Run the following command in order to find out the URL IP address assigned by docker to the opencds container. In this case the URL assigned by Docker is 172.17.0.6
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$ sudo docker inspect opencds | grep IPAddress
"IPAddress": "172.17.0.6",
"SecondaryIPAddresses": null, |
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Please check the wiki page cda2vmr container for more details about how to build the image. Before building the image edit the ejb-jar.xml file that is inside of the opencds-cdatovmr-docker folder. You will need to define the URL of the opencds service on the XML element env-entry-value as is showed below.
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... <session> <ejb-name>OpenCdsServiceMGR</ejb-name> <env-entry> <env-entry-name>OPENCDS_ENDPOINT</env-entry-name> <env-entry-type>java.lang.String</env-entry-type> <env-entry-value>http://172.17.0.6:8080/opencds-decision-support-service/evaluate</env-entry-value> </env-entry> ... |
The following command will build an image named opencds/cdatovmr.
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sudo docker build -t="opencds/cdatovmr" . |
After the images has been created you will be able to create a container based on this image. The following command will deploy an image and bind its ports to the local host, for example the container's SSH port (22) will be available on localhost:2222. Also the container will be running in interactive mode (-i -t parameters) so we will be able to see the logs from Glassfish server.
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sudo docker run -p 80818080:8080 -p 22232222:22 -p 4848:4848 -p 8181:8181 -p 9009:9009 --name cdatovmr -i -t opencds/cdatovmr |
Check that the following applications are available:
- Inference analyzer - http://locahost:80818080/SimplePredicateReducerVisualizer-1.0-SNAPSHOT
- Predicate/Reducer - http://localhost:80818080/opencds-decision-support-service-1.2.0-SNAPSHOT/evaluate?wsdl
- Predicate reducer Web service - http://localhost:80818080/CdaService/Evaluate?wsdl
- Predicate reducer web application - http://localhost:80818080/cda-ws-web/
For this demonstration we will only use the Predicate reducer Web service http://localhost:80818080/CdaService/Evaluate?wsdl
CDA document
The following CDA document is used in this example is available on the CDA Redaction Web service call
SoapUI setup
service project (cda-web-service/cda-ws-support-xml/samples/ccda.xml)
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<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="CDA.xsl"?>
<!--
Title: US_Realm_Header_Template
Original Filename: Version: 1.0
Revision History:
01/31/2011 bam created
07/29/2011 RWM modified
11/26/2011 RWM modified
-->
<ClinicalDocument xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="urn:hl7-org:v3" xmlns:cda="urn:hl7-org:v3" xmlns:sdtc="urn:hl7-org:sdtc">
<!--
********************************************************
CDA Header
********************************************************
-->
<realmCode code="US"/>
<typeId root="2.16.840.1.113883.1.3" extension="POCD_HD000040"/>
<!-- US General Header Template -->
<templateId root="2.16.840.1.113883.10.20.22.1.1"/>
<!-- *** Note: The next templateId, code and title will differ depending on what type of document is being sent. *** -->
<!-- conforms to the document specific requirements -->
<templateId root="2.16.840.1.113883.10.20.22.1.2"/>
<id extension="999021" root="2.16.840.1.113883.19"/>
<code codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" code="34133-9" displayName="Summarization of Episode Note"/>
<title>Good Health Health Summary</title>
<effectiveTime value="20050329171504+0500"/>
<confidentialityCode code="N" codeSystem="2.16.840.1.113883.5.25"/>
<languageCode code="en-US"/>
<setId extension="111199021" root="2.16.840.1.113883.19"/>
<versionNumber value="1"/>
<recordTarget>
<patientRole>
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SoapUI setup
For demonstration purposes we are using the open-source test tool SoapUI. The complete SoapUI project is available here.
Open SoapUI and create a new SOAP project, define the location of the WSDL of the CDA Redaction web service as is showed on the next figure:
This will create a project with samples of the supported SOAP requests.
SOAP request
The following figure shows the reduce SOAP request. The XML element payload contains the base64 version of the CDA document
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